genbank assemblies Search Results


genbank (national center for biotechnology information database) assemblies  (Biotechnology Information)
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Biotechnology Information genbank (national center for biotechnology information database) assemblies
Genbank (National Center For Biotechnology Information Database) Assemblies, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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genbank assembly number  (Biotechnology Information)
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Biotechnology Information genbank assembly number
Genbank Assembly Number, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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genbank assembly records  (Biotechnology Information)
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Biotechnology Information genbank assembly records
Genbank Assembly Records, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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genbank assembly database  (Biotechnology Information)
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Biotechnology Information genbank assembly database
Genbank Assembly Database, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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genbank refseq assembly  (Gallus BioPharmaceuticals)
90
Gallus BioPharmaceuticals genbank refseq assembly
Genbank Refseq Assembly, supplied by Gallus BioPharmaceuticals, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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ncbi (genbank: nt_010363) assembly  (Celera)
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Celera ncbi (genbank: nt_010363) assembly
Physical mapping of APBA2 and PCR-RFLP analysis of APBA2 duplications. A. An expanded view of the 15q12-q14 region containing distal duplication breakpoints is shown. Breakpoints BP3 and BP5 are depicted as jagged, hatched structures; BP4 is not thus shown but its position is indicated by an arrow over the map. STS marker positions are indicated on the map by closed circles, and arrows over the map indicate transcriptional orientation for genes in this region. YAC and BAC clone locations are shown below the map; YAC 764C6 is located in contig WC-153 and 962D11 is in WC-699. Closed circles within clones reflects the inclusion and position of specific STS markers shown above. B. PCR amplification of an APBA2-specific STS using genomic, YAC and BAC templates is shown. Position of clone pairs relative to cytogenetic banding and public sequence <t>assemblies</t> is indicated. Product consistent with genomic template is present only in clones from the region just telomeric to BP3. C. PCR from genomic or BAC clone template, followed by restriction with either Hinf l or Ava ll is shown. Unique banding patterns, corresponding to single nucleotide differences between copies, may be observed for the intact locus and each of the two duplication copies. RT-PCR using adult or fetal cDNA reveals the pattern corresponding to the intact locus only.
Ncbi (Genbank: Nt 010363) Assembly, supplied by Celera, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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assembly (supercontig1.9, genbank accession no. ch477194)  (Broad Institute Inc)
90
Broad Institute Inc assembly (supercontig1.9, genbank accession no. ch477194)
Physical mapping of APBA2 and PCR-RFLP analysis of APBA2 duplications. A. An expanded view of the 15q12-q14 region containing distal duplication breakpoints is shown. Breakpoints BP3 and BP5 are depicted as jagged, hatched structures; BP4 is not thus shown but its position is indicated by an arrow over the map. STS marker positions are indicated on the map by closed circles, and arrows over the map indicate transcriptional orientation for genes in this region. YAC and BAC clone locations are shown below the map; YAC 764C6 is located in contig WC-153 and 962D11 is in WC-699. Closed circles within clones reflects the inclusion and position of specific STS markers shown above. B. PCR amplification of an APBA2-specific STS using genomic, YAC and BAC templates is shown. Position of clone pairs relative to cytogenetic banding and public sequence <t>assemblies</t> is indicated. Product consistent with genomic template is present only in clones from the region just telomeric to BP3. C. PCR from genomic or BAC clone template, followed by restriction with either Hinf l or Ava ll is shown. Unique banding patterns, corresponding to single nucleotide differences between copies, may be observed for the intact locus and each of the two duplication copies. RT-PCR using adult or fetal cDNA reveals the pattern corresponding to the intact locus only.
Assembly (Supercontig1.9, Genbank Accession No. Ch477194), supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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thinopyrum elongatum genbank assembly gca_011799875.1  (Biotechnology Information)
90
Biotechnology Information thinopyrum elongatum genbank assembly gca_011799875.1
Physical mapping of APBA2 and PCR-RFLP analysis of APBA2 duplications. A. An expanded view of the 15q12-q14 region containing distal duplication breakpoints is shown. Breakpoints BP3 and BP5 are depicted as jagged, hatched structures; BP4 is not thus shown but its position is indicated by an arrow over the map. STS marker positions are indicated on the map by closed circles, and arrows over the map indicate transcriptional orientation for genes in this region. YAC and BAC clone locations are shown below the map; YAC 764C6 is located in contig WC-153 and 962D11 is in WC-699. Closed circles within clones reflects the inclusion and position of specific STS markers shown above. B. PCR amplification of an APBA2-specific STS using genomic, YAC and BAC templates is shown. Position of clone pairs relative to cytogenetic banding and public sequence <t>assemblies</t> is indicated. Product consistent with genomic template is present only in clones from the region just telomeric to BP3. C. PCR from genomic or BAC clone template, followed by restriction with either Hinf l or Ava ll is shown. Unique banding patterns, corresponding to single nucleotide differences between copies, may be observed for the intact locus and each of the two duplication copies. RT-PCR using adult or fetal cDNA reveals the pattern corresponding to the intact locus only.
Thinopyrum Elongatum Genbank Assembly Gca 011799875.1, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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genbank assembly id: gca_000001905.1; bioproject accession id: prjna12569  (Broad Institute Inc)
90
Broad Institute Inc genbank assembly id: gca_000001905.1; bioproject accession id: prjna12569
Physical mapping of APBA2 and PCR-RFLP analysis of APBA2 duplications. A. An expanded view of the 15q12-q14 region containing distal duplication breakpoints is shown. Breakpoints BP3 and BP5 are depicted as jagged, hatched structures; BP4 is not thus shown but its position is indicated by an arrow over the map. STS marker positions are indicated on the map by closed circles, and arrows over the map indicate transcriptional orientation for genes in this region. YAC and BAC clone locations are shown below the map; YAC 764C6 is located in contig WC-153 and 962D11 is in WC-699. Closed circles within clones reflects the inclusion and position of specific STS markers shown above. B. PCR amplification of an APBA2-specific STS using genomic, YAC and BAC templates is shown. Position of clone pairs relative to cytogenetic banding and public sequence <t>assemblies</t> is indicated. Product consistent with genomic template is present only in clones from the region just telomeric to BP3. C. PCR from genomic or BAC clone template, followed by restriction with either Hinf l or Ava ll is shown. Unique banding patterns, corresponding to single nucleotide differences between copies, may be observed for the intact locus and each of the two duplication copies. RT-PCR using adult or fetal cDNA reveals the pattern corresponding to the intact locus only.
Genbank Assembly Id: Gca 000001905.1; Bioproject Accession Id: Prjna12569, supplied by Broad Institute Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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four-copy cassette assembled via 2a peptide (genbank: om835789)  (Sangon Biotech)
90
Sangon Biotech four-copy cassette assembled via 2a peptide (genbank: om835789)
Physical mapping of APBA2 and PCR-RFLP analysis of APBA2 duplications. A. An expanded view of the 15q12-q14 region containing distal duplication breakpoints is shown. Breakpoints BP3 and BP5 are depicted as jagged, hatched structures; BP4 is not thus shown but its position is indicated by an arrow over the map. STS marker positions are indicated on the map by closed circles, and arrows over the map indicate transcriptional orientation for genes in this region. YAC and BAC clone locations are shown below the map; YAC 764C6 is located in contig WC-153 and 962D11 is in WC-699. Closed circles within clones reflects the inclusion and position of specific STS markers shown above. B. PCR amplification of an APBA2-specific STS using genomic, YAC and BAC templates is shown. Position of clone pairs relative to cytogenetic banding and public sequence <t>assemblies</t> is indicated. Product consistent with genomic template is present only in clones from the region just telomeric to BP3. C. PCR from genomic or BAC clone template, followed by restriction with either Hinf l or Ava ll is shown. Unique banding patterns, corresponding to single nucleotide differences between copies, may be observed for the intact locus and each of the two duplication copies. RT-PCR using adult or fetal cDNA reveals the pattern corresponding to the intact locus only.
Four Copy Cassette Assembled Via 2a Peptide (Genbank: Om835789), supplied by Sangon Biotech, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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genbank assembly accession  (Biotechnology Information)
90
Biotechnology Information genbank assembly accession
Physical mapping of APBA2 and PCR-RFLP analysis of APBA2 duplications. A. An expanded view of the 15q12-q14 region containing distal duplication breakpoints is shown. Breakpoints BP3 and BP5 are depicted as jagged, hatched structures; BP4 is not thus shown but its position is indicated by an arrow over the map. STS marker positions are indicated on the map by closed circles, and arrows over the map indicate transcriptional orientation for genes in this region. YAC and BAC clone locations are shown below the map; YAC 764C6 is located in contig WC-153 and 962D11 is in WC-699. Closed circles within clones reflects the inclusion and position of specific STS markers shown above. B. PCR amplification of an APBA2-specific STS using genomic, YAC and BAC templates is shown. Position of clone pairs relative to cytogenetic banding and public sequence <t>assemblies</t> is indicated. Product consistent with genomic template is present only in clones from the region just telomeric to BP3. C. PCR from genomic or BAC clone template, followed by restriction with either Hinf l or Ava ll is shown. Unique banding patterns, corresponding to single nucleotide differences between copies, may be observed for the intact locus and each of the two duplication copies. RT-PCR using adult or fetal cDNA reveals the pattern corresponding to the intact locus only.
Genbank Assembly Accession, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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reference genome of m. anisopliae (genbank assembly accession gca_013305495 − jef-290 strain)  (Biotechnology Information)
90
Biotechnology Information reference genome of m. anisopliae (genbank assembly accession gca_013305495 − jef-290 strain)
Physical mapping of APBA2 and PCR-RFLP analysis of APBA2 duplications. A. An expanded view of the 15q12-q14 region containing distal duplication breakpoints is shown. Breakpoints BP3 and BP5 are depicted as jagged, hatched structures; BP4 is not thus shown but its position is indicated by an arrow over the map. STS marker positions are indicated on the map by closed circles, and arrows over the map indicate transcriptional orientation for genes in this region. YAC and BAC clone locations are shown below the map; YAC 764C6 is located in contig WC-153 and 962D11 is in WC-699. Closed circles within clones reflects the inclusion and position of specific STS markers shown above. B. PCR amplification of an APBA2-specific STS using genomic, YAC and BAC templates is shown. Position of clone pairs relative to cytogenetic banding and public sequence <t>assemblies</t> is indicated. Product consistent with genomic template is present only in clones from the region just telomeric to BP3. C. PCR from genomic or BAC clone template, followed by restriction with either Hinf l or Ava ll is shown. Unique banding patterns, corresponding to single nucleotide differences between copies, may be observed for the intact locus and each of the two duplication copies. RT-PCR using adult or fetal cDNA reveals the pattern corresponding to the intact locus only.
Reference Genome Of M. Anisopliae (Genbank Assembly Accession Gca 013305495 − Jef 290 Strain), supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Physical mapping of APBA2 and PCR-RFLP analysis of APBA2 duplications. A. An expanded view of the 15q12-q14 region containing distal duplication breakpoints is shown. Breakpoints BP3 and BP5 are depicted as jagged, hatched structures; BP4 is not thus shown but its position is indicated by an arrow over the map. STS marker positions are indicated on the map by closed circles, and arrows over the map indicate transcriptional orientation for genes in this region. YAC and BAC clone locations are shown below the map; YAC 764C6 is located in contig WC-153 and 962D11 is in WC-699. Closed circles within clones reflects the inclusion and position of specific STS markers shown above. B. PCR amplification of an APBA2-specific STS using genomic, YAC and BAC templates is shown. Position of clone pairs relative to cytogenetic banding and public sequence assemblies is indicated. Product consistent with genomic template is present only in clones from the region just telomeric to BP3. C. PCR from genomic or BAC clone template, followed by restriction with either Hinf l or Ava ll is shown. Unique banding patterns, corresponding to single nucleotide differences between copies, may be observed for the intact locus and each of the two duplication copies. RT-PCR using adult or fetal cDNA reveals the pattern corresponding to the intact locus only.

Journal: BMC Genomics

Article Title: Partial duplication of the APBA2 gene in chromosome 15q13 corresponds to duplicon structures

doi: 10.1186/1471-2164-4-15

Figure Lengend Snippet: Physical mapping of APBA2 and PCR-RFLP analysis of APBA2 duplications. A. An expanded view of the 15q12-q14 region containing distal duplication breakpoints is shown. Breakpoints BP3 and BP5 are depicted as jagged, hatched structures; BP4 is not thus shown but its position is indicated by an arrow over the map. STS marker positions are indicated on the map by closed circles, and arrows over the map indicate transcriptional orientation for genes in this region. YAC and BAC clone locations are shown below the map; YAC 764C6 is located in contig WC-153 and 962D11 is in WC-699. Closed circles within clones reflects the inclusion and position of specific STS markers shown above. B. PCR amplification of an APBA2-specific STS using genomic, YAC and BAC templates is shown. Position of clone pairs relative to cytogenetic banding and public sequence assemblies is indicated. Product consistent with genomic template is present only in clones from the region just telomeric to BP3. C. PCR from genomic or BAC clone template, followed by restriction with either Hinf l or Ava ll is shown. Unique banding patterns, corresponding to single nucleotide differences between copies, may be observed for the intact locus and each of the two duplication copies. RT-PCR using adult or fetal cDNA reveals the pattern corresponding to the intact locus only.

Article Snippet: All exons are now accurately predicted in the NCBI (Genbank: NT_010363) and Celera assemblies, while the EnsembI assembly lacks the putative first exon.

Techniques: Marker, Clone Assay, Amplification, Sequencing, Reverse Transcription Polymerase Chain Reaction